OEAV15212991
SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0803/2021
ON455072
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-01-18
USA: South Dakota
29777
2022-05-09
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A.
Biomedical Engineering, University of South Dakota
29777
100.00
OEAV15212997
SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0809/2021
ON455043
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-02-01
USA: South Dakota
29777
2022-05-09
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A.
Biomedical Engineering, University of South Dakota
29777
100.00
OEAV15212999
SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0811/2021
ON455060
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-01-31
USA: South Dakota
29777
2022-05-09
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A.
Biomedical Engineering, University of South Dakota
29777
100.00
OEAV15213002
SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0814/2021
ON455075
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-02-01
USA: South Dakota
29777
2022-05-09
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A.
Biomedical Engineering, University of South Dakota
29767
99.97
OEAV15213014
SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0827/2021 ORF1ab polyprotein (ORF1ab) and ORF1a polyprotein (ORF1ab) genes, partial cds; surface glycoprotein (S) and ORF3a protein (ORF3a) genes, complete cds; envelope protein (E) and membrane glycoprotein (M) genes, partial cds; and ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
ON455065
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-01-19
USA: South Dakota
29500
2022-05-09
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A.
Biomedical Engineering, University of South Dakota
26803
90.86
OEAV3786793
SARS-CoV-2/USA: Louisiana/USA/LA-BIE-BP149/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
MZ893445
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-07-17
USA: Louisiana
29743
2021-08-24
oronasopharynx
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Lamers,S., Nolan,D., Rose,R., Murray,V. and Metzler,C.
Pathogen Genomics, BioInfoExperts, LLC
29135
97.96
OEAV3786794
SARS-CoV-2/USA: Louisiana/USA/LA-BIE-BP150/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
MZ893446
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-07-26
USA: Louisiana
29743
2021-08-24
oronasopharynx
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Lamers,S., Nolan,D., Rose,R., Murray,V. and Metzler,C.
Pathogen Genomics, BioInfoExperts, LLC
29135
97.96
OEAV3786795
SARS-CoV-2/USA: Louisiana/USA/LA-BIE-BP151/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
MZ893447
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-07-29
USA: Louisiana
29743
2021-08-24
oronasopharynx
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Lamers,S., Nolan,D., Rose,R., Murray,V. and Metzler,C.
Pathogen Genomics, BioInfoExperts, LLC
29116
97.89
OEAV3786796
SARS-CoV-2/USA: Louisiana/USA/LA-BIE-BP152/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), and nucleocapsid phosphoprotein (N) genes, complete cds; and ORF10 protein (ORF10) gene
MZ893448
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-07-30
USA: Louisiana
29603
2021-08-24
oronasopharynx
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Lamers,S., Nolan,D., Rose,R., Murray,V. and Metzler,C.
Pathogen Genomics, BioInfoExperts, LLC
28452
96.11
OEAV3786797
SARS-CoV-2/USA: Louisiana/USA/LA-BIE-BP153/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
MZ893449
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-07-30
USA: Louisiana
29743
2021-08-24
oronasopharynx
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Lamers,S., Nolan,D., Rose,R., Murray,V. and Metzler,C.
Pathogen Genomics, BioInfoExperts, LLC
29063
97.71
OEAV3786798
SARS-CoV-2/USA: Louisiana/USA/LA-BIE-BP159/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
MZ893450
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-08-03
USA: Louisiana
29743
2021-08-24
oronasopharynx
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Lamers,S., Nolan,D., Rose,R., Murray,V. and Metzler,C.
Pathogen Genomics, BioInfoExperts, LLC
28825
96.91
OEAV3786799
SARS-CoV-2/USA: Louisiana/USA/LA-BIE-BP160/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
MZ893451
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-07-30
USA: Louisiana
29743
2021-08-24
oronasopharynx
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Lamers,S., Nolan,D., Rose,R., Murray,V. and Metzler,C.
Pathogen Genomics, BioInfoExperts, LLC
29137
97.96
OEAV3786800
SARS-CoV-2/USA: Louisiana/USA/LA-BIE-BP161/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
MZ893452
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-07-30
USA: Louisiana
29743
2021-08-24
oronasopharynx
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Lamers,S., Nolan,D., Rose,R., Murray,V. and Metzler,C.
Pathogen Genomics, BioInfoExperts, LLC
29136
97.96
OEAV3786801
SARS-CoV-2/USA: Louisiana/USA/LA-BIE-BP162/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
MZ893453
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-08-02
USA: Louisiana
29743
2021-08-24
oronasopharynx
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Lamers,S., Nolan,D., Rose,R., Murray,V. and Metzler,C.
Pathogen Genomics, BioInfoExperts, LLC
29135
97.96
OEAV3786802
SARS-CoV-2/USA: Louisiana/USA/LA-BIE-BP163/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
MZ893454
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-08-02
USA: Louisiana
29743
2021-08-24
oronasopharynx
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Lamers,S., Nolan,D., Rose,R., Murray,V. and Metzler,C.
Pathogen Genomics, BioInfoExperts, LLC
29139
97.97
OEAV3786803
SARS-CoV-2/USA: Louisiana/USA/LA-BIE-BP164/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
MZ893455
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-08-02
USA: Louisiana
29743
2021-08-24
oronasopharynx
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Lamers,S., Nolan,D., Rose,R., Murray,V. and Metzler,C.
Pathogen Genomics, BioInfoExperts, LLC
29136
97.96
OEAV3786804
SARS-CoV-2/USA: Louisiana/USA/LA-BIE-BP165/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
MZ893456
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-08-02
USA: Louisiana
29743
2021-08-24
oronasopharynx
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Lamers,S., Nolan,D., Rose,R., Murray,V. and Metzler,C.
Pathogen Genomics, BioInfoExperts, LLC
29064
97.72
OEAV3786805
SARS-CoV-2/USA: Louisiana/USA/LA-BIE-BP166/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
MZ893457
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-08-02
USA: Louisiana
29743
2021-08-24
oronasopharynx
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Lamers,S., Nolan,D., Rose,R., Murray,V. and Metzler,C.
Pathogen Genomics, BioInfoExperts, LLC
29131
97.94
OEAV3786806
SARS-CoV-2/USA: Louisiana/USA/LA-BIE-BP167/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
MZ893458
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-08-03
USA: Louisiana
29743
2021-08-24
oronasopharynx
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Lamers,S., Nolan,D., Rose,R., Murray,V. and Metzler,C.
Pathogen Genomics, BioInfoExperts, LLC
29135
97.96